Simulations¶
The simulation module contains code for molecular dynamic simulation. It extensively uses custom types, which are presented in this section.
The first section (Usual simulation steps) describes how the code is organised, and is worth reading to understand the design of this module. Then an example shows how to use Jumos to run simple simulations, and provides an example of the API usage. The simulation part presents most of the API in a more formal maner.
The Potentials section lists the available potentials for use in Jumos, and how you can easily use another potential.